__add__()
(in KeyedList) |
__init__()
(in TransformationReaction) |
_find_limit_cycle()
(in Network) |
__call__()
(in CostEmailer) |
__init__()
(in TwoProductFirstOrderReaction) |
_get_structure()
(in Network) |
__call__()
(in CostPrinter) |
__init__()
(in Trajectory) |
_get_time_index()
(in Trajectory) |
__copy__()
(in KeyedList) |
__init__()
(in Redirector) |
_hashable_group()
(in Experiment) |
__deepcopy__()
(in KeyedList) |
__init__()
(in AmplitudeCheckResidual) |
_integral_theorydata()
(in Model) |
__delitem__()
(in KeyedList) |
__init__()
(in IntegralDataResidual) |
_integral_theorytheory()
(in Model) |
__delslice__()
(in KeyedList) |
__init__()
(in PeriodCheckResidual) |
_iter_limit_cycle()
(in Network) |
__deriv_saved
(in SloppyCell.ExprManip.Differentiation) |
__init__()
(in PriorInLog) |
_KNOWN_FUNCS
(in SloppyCell.ExprManip.Differentiation) |
__eq__()
(in Event) |
__init__()
(in Residual) |
_known_function_bodies
(in Trajectory) |
__eq__()
(in FunctionDefinition) |
__init__()
(in ScaledErrorInFit) |
_known_structures
(in Trajectory) |
__eq__()
(in Variable) |
__init__()
(in ScaledExtremum) |
_last_disabled_c
(in Network) |
__eq__()
(in Reaction) |
__init__()
(in Statement) |
_last_structure
(in Network) |
__getitem__()
(in Trajectory) |
__init__()
(in ConstraintViolatedException) |
_logical_comp_func_defs
(in Network) |
__getstate__()
(in Network) |
__len__()
(in Trajectory) |
_make__assignment()
(in Trajectory) |
__getstate__()
(in Trajectory) |
__mul__()
(in KeyedList) |
_make__sens_assignment()
(in Trajectory) |
__iadd__()
(in KeyedList) |
__ne__()
(in Event) |
_make_alg_deriv_func()
(in Network) |
__imul__()
(in KeyedList) |
__ne__()
(in FunctionDefinition) |
_make_alg_res_func()
(in Network) |
__init__()
(in CalculationCollection) |
__ne__()
(in Reaction) |
_make_ddaskr_jac()
(in Network) |
__init__()
(in Experiment) |
__repr__()
(in KeyedList) |
_make_dres_dc_function()
(in Network) |
__init__()
(in ExperimentCollection) |
__repr__()
(in Model) |
_make_dres_dcdot_function()
(in Network) |
__init__()
(in KeyedList) |
__rmul__()
(in KeyedList) |
_make_dres_dsinglep()
(in Network) |
__init__()
(in Model) |
__setstate__()
(in Network) |
_make_integrate_stochastic_tidbit()
(in Network) |
__init__()
(in CostEmailer) |
__setstate__()
(in Trajectory) |
_make_log_funcs()
(in Network) |
__init__()
(in CostPrinter) |
__str__()
(in KeyedList) |
_make_res_function()
(in Network) |
__init__()
(in Bunch) |
__str__()
(in ConstraintViolatedException) |
_make_root_func()
(in Network) |
__init__()
(in Compartment) |
_accept_move()
(in SloppyCell.Ensembles) |
_make_sens_rhs()
(in Network) |
__init__()
(in ConstraintEvent) |
_accept_move_recalc_alg()
(in SloppyCell.Ensembles) |
_makeCrossReferences()
(in Network) |
__init__()
(in Event) |
_add_assignments_to_function_body()
(in Network) |
_makeDiffEqRHS()
(in Network) |
__init__()
(in FunctionDefinition) |
_add_variable()
(in Network) |
_msgs
(in SloppyCell.daskr) |
__init__()
(in Parameter) |
_c_module_cache
(in Network) |
_node_attrs
(in SloppyCell.ExprManip.AST) |
__init__()
(in Species) |
_checkIdUniqueness()
(in Network) |
_notify()
(in Model) |
__init__()
(in Variable) |
_common_func_strs
(in Network) |
_ONE
(in SloppyCell.ExprManip.Differentiation) |
__init__()
(in Network) |
_common_func_strs_c
(in Network) |
_ONE
(in SloppyCell.ExprManip.Simplify) |
__init__()
(in CoPromoterReaction) |
_common_namespace
(in Network) |
_OP_ORDER
(in SloppyCell.ExprManip.AST) |
__init__()
(in ConstructionReaction) |
_common_namespace
(in Trajectory) |
_print_sbml_fatals()
(in SloppyCell.ReactionNetworks.SBMLInterface) |
__init__()
(in ExponentialDecayReaction) |
_common_prototypes_c
(in Network) |
_py_func_dict_cache
(in Network) |
__init__()
(in FirstOrderReaction) |
_compute_sf_and_sfent_for_expt()
(in Model) |
_quadratic_cost()
(in SloppyCell.Ensembles) |
__init__()
(in HeterodimerDissociationReaction) |
_double_epsilon_
(in SloppyCell.Model_mod) |
_sampling_matrix()
(in SloppyCell.Ensembles) |
__init__()
(in HeterodimerizationReaction) |
_double_epsilon_
(in SloppyCell.ReactionNetworks.Dynamics) |
_save_ens()
(in SloppyCell.Ensembles) |
__init__()
(in HillDegradationReaction) |
_double_max_
(in SloppyCell.ReactionNetworks.Network_mod) |
_sens_event_derivs_cache
(in Network) |
__init__()
(in HillTransportReaction) |
_double_tiny_
(in SloppyCell.ReactionNetworks.Dynamics) |
_smooth_trigger()
(in Network) |
__init__()
(in HomodimerDissociationReaction) |
_double_tiny_
(in SloppyCell.ReactionNetworks.Network_mod) |
_standard_func_defs
(in Network) |
__init__()
(in HomodimerizationReaction) |
_dynamic_event_methods
(in Network) |
_sub_for_piecewise()
(in Network) |
__init__()
(in MichaelisMentenDegradationReaction) |
_dynamic_funcs
(in Trajectory) |
_sub_for_piecewise_ast()
(in Network) |
__init__()
(in MichaelisMentenReaction) |
_dynamic_structure_methods
(in Network) |
_sub_var_names()
(in Trajectory) |
__init__()
(in ProductionReaction) |
_eliminate_slowest_mode()
(in Network) |
_TEMP_DIR
(in SloppyCell) |
__init__()
(in PromoterReaction) |
_EMPTY_MUL
(in SloppyCell.ExprManip.Py2TeX) |
_trial_move()
(in SloppyCell.Ensembles) |
__init__()
(in Reaction) |
_epsilon
(in SloppyCell.lmopt) |
_VERSION
(in SloppyCell) |
__init__()
(in SecondOrderReaction) |
_evaluate()
(in Model) |
_ZERO
(in SloppyCell.ExprManip.Differentiation) |
__init__()
(in SelfCatalyticMichaelisMentenReaction) |
_FARTHEST_OUT
(in SloppyCell.ExprManip.AST) |
_ZERO
(in SloppyCell.ExprManip.Simplify) |