Package SloppyCell :: Package ReactionNetworks :: Module SBMLInterface

Module SBMLInterface


Methods for loading from and saving to SBML files.

Classes

KeyedList

Functions

toSBMLFile(net, fileName)

source code

SBMLtoDOT(sbmlFileName, dotFileName)

source code

rxn_add_stoich(srxn, rid, stoich, is_product=True)

source code

toSBMLString(net)

source code

_print_sbml_fatals(doc)

source code

to_SBML_l2v1(from_name, to_name)
Convert an SBML file to level 2, version 1 using lisbml.

source code

fromSBMLFile(fileName, id=None, duplicate_rxn_params=False)

source code

stoichToString(species, stoich)

source code

fromSBMLString(sbmlStr, id=None, duplicate_rxn_params=False)

source code

createNetworkParameter(p)

source code

Variables

logger = logging.getLogger('RxnNets.SBMLInterface')

Imports: os, sys, logging, libsbml, Network_mod, SloppyCell, ExprManip

Function Details


Convert an SBML file to level 2, version 1 using lisbml.

from_name  Name of file to read SBML from.
to_name    File to output SBML to.