Package SloppyCell :: Package Vandermonde :: Module clusterScripts

Module clusterScripts

Functions

getDist(ind1, ind2, distMat)
distMat is a distance matrix.

source code

FlattenIt(x, distMat)
Takes topo output from hierarchical clustering and orders the list at the bottom level to correspond to the optimal permutation.

source code

makePermutationMatrix(permList)
Takes a list defining the permutation and makes the appropriate matrix.

source code

normColumns(mat1)
Normalizes each column of a matrix.

source code

colorAlignColumns(mat1)
Multiplies columns by +/- 1 to make them have positive dot product with neighboring columns.

source code

Imports: scipy

Function Details

[hide private]

getDist(ind1, ind2, distMat)

source code


distMat is a distance matrix.  distMat[i,j] == distance from i to j

normColumns(mat1)

source code


Normalizes each column of a matrix.  So far just for display purposes.

colorAlignColumns(mat1)

source code


Multiplies columns by +/- 1 to make them have positive dot product with neighboring
columns.  So far just for display purposes.