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Return tuples representing all the scale factors in this experiment. A tuple will contain multiple entries if several variables share a scale factor. |
Set the type of prior to place on a given group of scalefactors. The group contains a collection of variables that are sharing a given scale factor which may be just one variable. You can see what the current groups are with expt.get_sf_groups(). Currently implemented prior types are: 'uniform in sf': This is a uniform prior over scale factors. This is simplest and fastest to compute, but it tends to weight parameter sets that yield large scale factors heavily. It takes no parameters. 'gaussian in log sf': This is a Gaussian prior over the logarithm of the scale factor. This should avoid the problem of weighting large factors heavily. It takes two parameters: the mean of the normal distribution, and it's standard deviation. For example, parameters (log(3.0), log(10)), will place a prior that holds 95% of the probability between 3 / 10**2 and 3 * 10**2. |
Constrain the period of the oscillations to a value (period) with the error (sigma). The period is found using the maximum to maximum distance of the first two maxima found between startTime and two periods after the startTime. |
Turn on applying a constraint that the integrated area in two different parts of the plot should be the same. startTime and testTime are the starting points to begin the integration for the period-long each. |
Add an integral data set to the experiment. calcKey The id of the calculation this data corresponds to traj The trajectory to compare against uncert_traj A trajectory of data uncertainties vars What variables to fit against interval The time interval to fit over, defaults to the entire traj |
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