Package SloppyCell

source code

Submodules

[hide private]

SloppyCell.Collections
SloppyCell.Ensembles
SloppyCell.ExprManip
- SloppyCell.ExprManip.AST
- SloppyCell.ExprManip.Differentiation
- SloppyCell.ExprManip.Extraction
- SloppyCell.ExprManip.Py2TeX
- SloppyCell.ExprManip.Simplify: Functions for simplifying python math expressions.
- SloppyCell.ExprManip.Substitution
SloppyCell.KeyedList_mod: Holds the KeyedList class.
SloppyCell.Model_mod: Model class that unites theory with data.
SloppyCell.Observers
SloppyCell.OldScipySupport: Alters SciPy 0.3.2 to look like version SciPy 0.5.1 as far as SloppyCell is concerned.
SloppyCell.Optimization
SloppyCell.Plotting
SloppyCell.ReactionNetworks
- SloppyCell.ReactionNetworks.Components
- SloppyCell.ReactionNetworks.Dynamics: Methods for evaluating the dynamics of Network.
- SloppyCell.ReactionNetworks.IO
- SloppyCell.ReactionNetworks.Network_mod
- SloppyCell.ReactionNetworks.OptDesign
- SloppyCell.ReactionNetworks.PerfectData: Methods for generating "perfect data" hessians.
- SloppyCell.ReactionNetworks.Plotting
- SloppyCell.ReactionNetworks.Reactions
- SloppyCell.ReactionNetworks.RunInParallel
- SloppyCell.ReactionNetworks.SBMLInterface: Methods for loading from and saving to SBML files.
- SloppyCell.ReactionNetworks.Trajectory_mod
SloppyCell.Redirector_mod
SloppyCell.Residuals
SloppyCell.RunInParallel
SloppyCell.Subspaces
SloppyCell.Utility
SloppyCell.Vandermonde
- SloppyCell.Vandermonde.OptimizeSumDets
- SloppyCell.Vandermonde.VdmPairwise
- SloppyCell.Vandermonde.clusterScripts
- SloppyCell.Vandermonde.decompHess
SloppyCell.daskr
SloppyCell.lmopt
SloppyCell.make_htdocs
SloppyCell.setup

Variables

[hide private]

_VERSION = 'Wed Jun 3 10:14:54 2009'

_TEMP_DIR = os.path.join(os.getcwd(), '.SloppyCell')

logger = logging.getLogger('__init__')

disable_c = False

args_to_remove = []

currdir = os.getcwd()

HAVE_PYPAR = False

num_procs = 1

my_rank = 0

my_host = socket.gethostname()

Imports: os, logging, sys, pypar, atexit, socket, OldScipySupport